MAPPFinder: using Gene Ontology and GenMAPP to create a global gene-expression profile from microarray data.

Scott W. Doniger; Nathan Salomonis; Kam D Dahlquist; Karen Vranizan; Steven C Lawlor; Bruce R Conklin

MAPPFinder: using Gene Ontology and GenMAPP to create a global gene-expression profile from microarray data.

Scott W. Doniger, Nathan Salomonis, Kam D Dahlquist, Karen Vranizan, Steven C Lawlor, Bruce R Conklin

Research output: Contribution to journal › Article › peer-review

Abstract

MAPPFinder is a tool that creates a global gene-expression profile across all areas of biology by integrating the annotations of the Gene Ontology (GO) Project with the free software package GenMAPP (http://www.GenMAPP.org). The results are displayed in a searchable browser, allowing the user to rapidly identify GO terms with over-represented numbers of geneexpression changes. Clicking on GO terms generates GenMAPP graphical files where gene relationships can be explored, annotated, and files can be freely exchanged.

Original language	English
Article number	R7
Pages (from-to)	R7
Journal	Genome Biology
Volume	4
Issue number	1
State	Published - 2003
Externally published	Yes

ASJC Scopus Subject Areas

Ecology, Evolution, Behavior and Systematics
Genetics
Cell Biology

Disciplines

Biology
Genomics

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https://digitalcommons.lmu.edu/bio_fac/3

Cite this

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title = "MAPPFinder: using Gene Ontology and GenMAPP to create a global gene-expression profile from microarray data.",

abstract = " MAPPFinder is a tool that creates a global gene-expression profile across all areas of biology by integrating the annotations of the Gene Ontology (GO) Project with the free software package GenMAPP (http://www.GenMAPP.org). The results are displayed in a searchable browser, allowing the user to rapidly identify GO terms with over-represented numbers of geneexpression changes. Clicking on GO terms generates GenMAPP graphical files where gene relationships can be explored, annotated, and files can be freely exchanged.",

author = "Doniger, {Scott W.} and Nathan Salomonis and Dahlquist, {Kam D} and Karen Vranizan and Lawlor, {Steven C} and Conklin, {Bruce R}",

note = "Doniger, S.W., Salomonis, N., Dahlquist, K.D., Vranizan, K., Lawlor, S.C., & Conklin, B.R. (2003) MAPPFinder: Using Gene Ontology and GenMAPP to Create a Global Gene-Expression Profile from Microarray Data. Genome Biology 4: R7. The electronic version of this article is the complete one and can be found online at http://genomebiology.com/2003/4/1/R7 {\textcopyright} 2003 Doniger et al.; licensee BioMed Central Ltd. This is an Open Access article: verbatim copying and redistribution of this article are permitted in allmedia for any purpose, provided this notice is preserved along with the article's original URL.",

year = "2003",

language = "English",

volume = "4",

pages = "R7",

journal = "Genome Biology",

issn = "1465-6914",

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T2 - using Gene Ontology and GenMAPP to create a global gene-expression profile from microarray data.

AU - Doniger, Scott W.

AU - Salomonis, Nathan

AU - Dahlquist, Kam D

AU - Vranizan, Karen

AU - Lawlor, Steven C

AU - Conklin, Bruce R

N1 - Doniger, S.W., Salomonis, N., Dahlquist, K.D., Vranizan, K., Lawlor, S.C., & Conklin, B.R. (2003) MAPPFinder: Using Gene Ontology and GenMAPP to Create a Global Gene-Expression Profile from Microarray Data. Genome Biology 4: R7. The electronic version of this article is the complete one and can be found online at http://genomebiology.com/2003/4/1/R7 © 2003 Doniger et al.; licensee BioMed Central Ltd. This is an Open Access article: verbatim copying and redistribution of this article are permitted in allmedia for any purpose, provided this notice is preserved along with the article's original URL.

PY - 2003

Y1 - 2003

N2 - MAPPFinder is a tool that creates a global gene-expression profile across all areas of biology by integrating the annotations of the Gene Ontology (GO) Project with the free software package GenMAPP (http://www.GenMAPP.org). The results are displayed in a searchable browser, allowing the user to rapidly identify GO terms with over-represented numbers of geneexpression changes. Clicking on GO terms generates GenMAPP graphical files where gene relationships can be explored, annotated, and files can be freely exchanged.

AB - MAPPFinder is a tool that creates a global gene-expression profile across all areas of biology by integrating the annotations of the Gene Ontology (GO) Project with the free software package GenMAPP (http://www.GenMAPP.org). The results are displayed in a searchable browser, allowing the user to rapidly identify GO terms with over-represented numbers of geneexpression changes. Clicking on GO terms generates GenMAPP graphical files where gene relationships can be explored, annotated, and files can be freely exchanged.

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MAPPFinder: using Gene Ontology and GenMAPP to create a global gene-expression profile from microarray data.

Abstract

ASJC Scopus Subject Areas

Disciplines

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